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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
4
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
53
DNA binding
16
DNA accessibility
14
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
13
control
Date released
64
October, 2019
19
April, 2020
2
March, 2020
1
February, 2020
Available data
62
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
tsv
4
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
85
Homo sapiens
Biosample type
64
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
19
LungMap
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
67
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
tissue
tibial nerve
35
5
2
1
lung
10
9
1
islet of Langerhans
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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