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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
pCHi-C
Assay category
74
DNA binding
43
DNA accessibility
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
27
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
2
March, 2020
Available data
100
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
13
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
133
Homo sapiens
Biosample type
133
tissue
66
cell line
37
primary cell
Organ
546
connective tissue
504
pancreas
487
adipose tissue
360
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
81
musculature of body
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
133
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
133
AMP-T2D consortium
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
pulmonary artery
2
islet of Langerhans
1
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