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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
52
ChIP-seq
6
snATAC-seq
4
RRBS
3
pCHi-C
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
60
Transcription
Date released
49
August, 2021
6
October, 2019
5
July, 2019
Available data
49
txt
11
bam
11
bigWig
11
tsv
Organism
60
Homo sapiens
Biosample type
50
tissue
6
primary cell
4
cell line
Organ
474
connective tissue
403
pancreas
398
adipose tissue
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
0
mammary gland
Project
60
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
49
Katalin Susztak, Upenn
11
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
60 results
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total RNA-seq
tissue
kidney
49
metanephros
1
primary cell
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
+ See 1 more…
cell line
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
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