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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
53
total RNA-seq
29
ChIP-seq
6
snATAC-seq
3
pCHi-C
3
snDrop-seq
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
118
Transcription
29
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
22
April, 2019
14
May, 2023
10
October, 2019
8
February, 2021
4
July, 2019
3
March, 2020
2
December, 2019
Available data
153
bed narrowPeak
103
bam
94
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
17
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
308
Homo sapiens
Biosample type
297
tissue
11
cell line
Organ
927
pancreas
644
connective tissue
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
261
AMP
47
KPMP
Genome assembly (visualization)
168
GRCh38
95
hg19
Lab
142
Katalin Susztak, Upenn
117
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
6
audit script error
target.investigated_as!
transcription factor
organ_slims!
epithelium
BIOSAMPLE
ASSAY
308 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
snDrop-seq
STARR-seq
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
26
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
RCC 7860 vector
1
1
1
HEK293T
2
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
MCF-7
1
+ See 1 more…
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