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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
total RNA-seq
42
ChIP-seq
4
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
WGBS
Assay category
403
Transcription
42
DNA binding
8
DNA accessibility
2
DNA methylation
Target of assay
25
histone
25
histone modification
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
31
October, 2019
16
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
454
bam
453
bigWig
402
tsv
38
bed narrowPeak
35
bigBed narrowPeak
23
fastq
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
455
Homo sapiens
Biosample type
453
tissue
2
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
0
mammary gland
Project
455
AMP
Genome assembly (visualization)
457
hg19
455
GRCh38
Lab
455
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
455 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
tibial nerve
4
24
1
2
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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