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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
5
DNase-seq
5
total RNA-seq
2
ATAC-seq
2
Hi-C
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
72
DNA binding
8
DNA accessibility
5
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
45
histone
45
histone modification
29
broad histone mark
21
control
16
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
63
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2020
1
October, 2017
Available data
86
bam
62
bigWig
54
bed narrowPeak
52
bigBed narrowPeak
24
fastq
7
bed broadPeak
7
bigBed broadPeak
7
tsv
5
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
91
Homo sapiens
Biosample type
68
tissue
22
primary cell
1
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
62
hg19
59
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
spleen
20
1
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
MCF-7
1
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