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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
2
pCHi-C
Assay category
52
DNA binding
5
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
other post-translational modification
Date released
42
October, 2019
7
December, 2018
7
January, 2019
6
November, 2018
2
March, 2020
1
February, 2020
1
October, 2017
Available data
63
bam
44
bigWig
38
bed narrowPeak
36
bigBed narrowPeak
21
fastq
7
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
65
tissue
1
cell line
Organ
946
pancreas
789
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
44
GRCh38
42
hg19
Lab
66
AMP-T2D consortium
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
2
1
spleen
17
1
1
2
1
cell line
MCF-7
1
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