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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
30
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
30
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
2
October, 2019
1
January, 2018
Available data
58
bigWig
52
bed narrowPeak
45
bam
45
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
16
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
84
Homo sapiens
Biosample type
84
tissue
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
62
hg19
43
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
84 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
forelimb muscle
1
hindlimb muscle
1
islet of Langerhans
1
left ventricle myocardium
1
pituitary gland
1
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