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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA binding
38
DNA accessibility
9
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
43
June, 2019
26
August, 2017
20
October, 2019
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
83
bigWig
77
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
tar
1
txt
Organism
110
Homo sapiens
Biosample type
76
tissue
34
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
86
hg19
65
GRCh38
Lab
110
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
17
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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