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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
9
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
22
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
33
bigWig
27
bed narrowPeak
23
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
2
bedpe bed3+
2
hic
Organism
55
Homo sapiens
Biosample type
43
tissue
12
primary cell
Organ
755
liver
720
pancreas
643
connective tissue
477
adipose tissue
348
epithelium
306
heart
247
brain
187
kidney
175
vasculature
172
blood vessel
147
bone element
92
artery
77
limb
60
blood
60
bodily fluid
55
musculature of body
40
nerve
37
embryo
28
eye
21
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
35
hg19
19
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
DNA methylation
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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