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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
4
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
60
Homo sapiens
Biosample type
47
tissue
13
primary cell
Organ
772
pancreas
759
liver
645
connective tissue
481
adipose tissue
401
epithelium
313
heart
247
brain
189
kidney
177
vasculature
173
blood vessel
146
bone element
92
artery
78
limb
60
blood
60
bodily fluid
60
musculature of body
40
nerve
37
embryo
25
eye
22
spleen
19
vein
9
lung
4
gonad
4
ovary
4
skeleton
2
pericardium
1
lymph node
1
pituitary gland
1
spinal cord
Project
60
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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