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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
32
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
10
June, 2019
8
July, 2019
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
26
bigWig
21
bed narrowPeak
15
bam
15
tagAlign
13
bed broadPeak
8
bigBed narrowPeak
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
52
Homo sapiens
Biosample type
40
tissue
12
primary cell
Organ
769
pancreas
759
liver
647
connective tissue
480
adipose tissue
396
epithelium
294
heart
217
brain
185
kidney
147
bone element
128
vasculature
124
blood vessel
87
artery
71
limb
60
blood
60
bodily fluid
52
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
30
hg19
13
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
small RNA-seq
month_released!
May, 2019
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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