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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
5
RRBS
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
26
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
26
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
2
May, 2019
1
March, 2020
1
May, 2022
Available data
15
tagAlign
14
bed narrowPeak
14
bigWig
13
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
bedpe bed3+
2
fastq
2
hic
1
bigBed narrowPeak
Organism
39
Homo sapiens
Biosample type
36
tissue
3
primary cell
Organ
237
liver
198
pancreas
153
epithelium
140
kidney
124
heart
97
connective tissue
89
bone element
66
brain
63
adipose tissue
42
vasculature
40
blood vessel
39
musculature of body
27
eye
26
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
8
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
36
hg19
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bedpe bed3+
assembly!
GRCh38
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
gastrocnemius medialis
4
1
muscle of leg
2
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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