Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
31
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
26
August, 2017
10
July, 2019
7
May, 2019
3
March, 2020
2
February, 2020
2
June, 2019
1
May, 2022
Available data
27
bigWig
20
bed narrowPeak
16
bam
15
tagAlign
13
bed broadPeak
9
tsv
7
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
51
Homo sapiens
Biosample type
46
tissue
5
primary cell
Organ
760
liver
705
pancreas
634
connective tissue
482
adipose tissue
327
epithelium
308
heart
246
brain
176
vasculature
172
blood vessel
169
kidney
92
artery
78
limb
63
bone element
60
blood
60
bodily fluid
51
musculature of body
40
nerve
31
embryo
29
eye
23
spleen
18
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
Project
51
AMP
Genome assembly (visualization)
29
hg19
13
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bedpe bed3+
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
51 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
2
1
skeletal muscle satellite cell
1
1
Download