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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
33
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
23
August, 2017
10
July, 2019
8
June, 2019
6
May, 2019
3
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
21
bam
14
bigBed narrowPeak
13
bed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
53
Homo sapiens
Biosample type
42
tissue
11
primary cell
Organ
713
pancreas
652
liver
614
connective tissue
458
adipose tissue
366
epithelium
293
heart
218
brain
179
kidney
154
vasculature
151
blood vessel
147
bone element
83
artery
61
limb
54
blood
54
bodily fluid
53
musculature of body
30
embryo
29
nerve
28
eye
16
vein
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
36
hg19
20
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bedpe bed3+
target.investigated_as!
control
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
19
1
4
1
1
muscle of leg
6
1
gastrocnemius medialis
1
4
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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