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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
17
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
24
bam
21
bigWig
14
bed narrowPeak
14
bigBed narrowPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
Organism
35
Homo sapiens
Biosample type
22
tissue
13
primary cell
Organ
710
liver
590
pancreas
527
connective tissue
427
adipose tissue
375
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
40
nerve
37
embryo
35
musculature of body
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
23
hg19
20
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
August, 2017
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
tissue
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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