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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
7
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
March, 2020
2
February, 2020
1
May, 2022
Available data
32
bigWig
27
bed narrowPeak
22
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
Organism
56
Homo sapiens
Biosample type
43
tissue
13
primary cell
Organ
763
pancreas
759
liver
648
connective tissue
482
adipose tissue
397
epithelium
269
heart
247
brain
189
kidney
174
vasculature
170
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
56
musculature of body
40
nerve
37
embryo
29
eye
22
spleen
18
vein
9
lung
4
gonad
4
ovary
4
skeleton
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
spinal cord
1
thymus
Project
56
AMP
Genome assembly (visualization)
34
hg19
18
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
March, 2020
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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