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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
32
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
28
bigWig
21
bed narrowPeak
17
bam
15
tagAlign
13
bed broadPeak
9
tsv
8
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
54
Homo sapiens
Biosample type
41
tissue
13
primary cell
Organ
771
pancreas
762
liver
650
connective tissue
483
adipose tissue
396
epithelium
295
heart
221
brain
186
kidney
147
bone element
128
vasculature
124
blood vessel
87
artery
71
limb
60
blood
60
bodily fluid
54
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
32
hg19
15
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
May, 2019
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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