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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
5
RRBS
4
Hi-C
2
total RNA-seq
1
single cell RNA-seq
Assay category
12
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
March, 2020
2
February, 2020
2
June, 2019
1
May, 2019
1
May, 2022
Available data
bigWig
27
bed narrowPeak
22
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
Organism
24
Homo sapiens
Biosample type
21
tissue
3
primary cell
Organ
197
pancreas
164
liver
151
epithelium
138
kidney
121
heart
96
connective tissue
89
bone element
63
adipose tissue
60
brain
35
vasculature
34
blood vessel
27
eye
25
limb
24
musculature of body
13
artery
12
nerve
9
lung
8
embryo
8
spleen
6
blood
6
bodily fluid
6
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
spinal cord
1
thymus
Project
24
AMP
Genome assembly (visualization)
3
hg19
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
March, 2020
files.file_type!
bigWig
BIOSAMPLE
ASSAY
24 results
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Clear Filters
ChIP-seq
RRBS
Hi-C
total RNA-seq
single cell RNA-seq
tissue
skeletal muscle tissue
9
4
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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