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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
small RNA-seq
2
total RNA-seq
1
WGBS
Assay category
DNA accessibility
17
DNA binding
4
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
10
June, 2019
7
May, 2019
5
July, 2019
March, 2020
Available data
32
bigWig
27
bed narrowPeak
22
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
Organism
22
Homo sapiens
Biosample type
12
primary cell
10
tissue
Organ
672
liver
608
pancreas
579
connective tissue
437
adipose tissue
272
epithelium
208
brain
167
heart
161
vasculature
158
blood vessel
88
artery
70
limb
64
kidney
60
blood
60
bodily fluid
58
bone element
39
nerve
36
embryo
22
musculature of body
22
spleen
17
vein
3
eye
1
pericardium
1
pituitary gland
Project
22
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
22
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
March, 2020
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
small RNA-seq
total RNA-seq
WGBS
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
tissue
muscle of leg
7
1
skeletal muscle tissue
1
1
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