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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
21
total RNA-seq
7
Hi-C
7
RRBS
6
small RNA-seq
4
single cell RNA-seq
1
WGBS
Assay category
257
DNA binding
DNA accessibility
31
Transcription
8
DNA methylation
7
3D chromatin structure
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
35
May, 2019
26
August, 2017
26
July, 2019
15
October, 2017
14
February, 2020
10
June, 2019
March, 2020
1
May, 2022
Available data
230
bam
219
bigWig
197
bed narrowPeak
133
tagAlign
108
bigBed narrowPeak
30
tsv
28
bed broadPeak
20
fastq
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
3
bed bed3+
3
hdf5
1
tagAlign bed3+
Organism
303
Homo sapiens
Biosample type
274
tissue
29
primary cell
Organ
763
pancreas
759
liver
648
connective tissue
482
adipose tissue
397
epithelium
309
heart
247
brain
189
kidney
174
vasculature
170
blood vessel
bone element
92
artery
78
limb
60
blood
60
bodily fluid
56
musculature of body
40
nerve
37
embryo
29
eye
22
spleen
18
vein
9
lung
4
gonad
4
ovary
4
skeleton
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
spinal cord
1
thymus
Project
303
AMP
Genome assembly (visualization)
201
GRCh38
174
hg19
Lab
303
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
month_released!
March, 2020
organ_slims!
bone element
BIOSAMPLE
ASSAY
303 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
single cell RNA-seq
WGBS
tissue
skeletal muscle tissue
22
1
4
1
1
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 73 more…
primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
skeletal muscle cell
2
1
+ See 3 more…
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