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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
5
RRBS
2
pCHi-C
1
WGBS
Assay category
DNA accessibility
39
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
4
March, 2020
Available data
28
bigWig
27
bed narrowPeak
18
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tsv
Organism
53
Homo sapiens
Biosample type
42
tissue
11
primary cell
Organ
569
liver
294
pancreas
225
brain
200
epithelium
169
connective tissue
150
heart
111
vasculature
107
blood vessel
85
bone element
82
adipose tissue
71
limb
66
kidney
60
blood
60
bodily fluid
52
musculature of body
35
nerve
34
artery
23
embryo
23
spleen
19
vein
10
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
32
hg19
14
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
Transcription
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
WGBS
tissue
skeletal muscle tissue
22
4
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
lung
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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