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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
10
single cell RNA-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
3
pCHi-C
2
small RNA-seq
Assay category
59
DNA binding
DNA accessibility
18
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
26
August, 2017
10
July, 2019
10
June, 2019
9
April, 2020
8
November, 2018
7
December, 2018
7
January, 2019
7
March, 2020
7
May, 2019
2
February, 2020
1
May, 2022
Available data
48
bigWig
46
bam
39
bed narrowPeak
26
bigBed narrowPeak
24
fastq
15
tagAlign
13
bed broadPeak
11
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
94
Homo sapiens
Biosample type
81
tissue
13
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
9
LungMap
Genome assembly (visualization)
50
hg19
34
GRCh38
Lab
85
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
small RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
spleen
20
2
1
lung
9
1
muscle of leg
7
1
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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