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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
10
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
39
DNA binding
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
4
February, 2023
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
txt
2
bedpe bed3+
2
fastq
2
hic
Organism
65
Homo sapiens
Biosample type
52
tissue
13
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
acetabular part of hip bone
1
+ See 4 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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