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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
19
August, 2017
10
July, 2019
6
June, 2019
5
March, 2020
5
May, 2019
2
February, 2020
1
May, 2022
Available data
23
bigWig
18
bam
16
bed narrowPeak
10
tagAlign
9
tsv
8
bed broadPeak
8
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
48
Homo sapiens
Biosample type
39
tissue
9
primary cell
Organ
702
liver
700
pancreas
617
connective tissue
471
adipose tissue
352
epithelium
276
heart
176
kidney
152
vasculature
149
blood vessel
147
bone element
132
brain
86
artery
63
limb
59
blood
59
bodily fluid
48
musculature of body
32
nerve
29
embryo
26
eye
21
spleen
13
vein
10
lung
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
27
hg19
15
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
15
1
4
1
1
muscle of leg
5
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
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