Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
27
DNA binding
6
Transcription
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
4
July, 2019
4
March, 2020
1
January, 2018
1
May, 2022
Available data
67
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
6
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
70
Homo sapiens
Biosample type
59
tissue
11
primary cell
Organ
656
pancreas
623
liver
588
connective tissue
426
adipose tissue
305
epithelium
186
heart
164
vasculature
162
brain
159
blood vessel
125
kidney
96
limb
93
artery
70
bone element
70
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pericardium
1
pituitary gland
Project
70
AMP
Genome assembly (visualization)
70
hg19
52
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
70 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of leg
13
6
muscle of arm
17
skeletal muscle tissue
13
1
1
1
1
psoas muscle
2
2
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
See all biosamples
Download