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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
11
total RNA-seq
6
Hi-C
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
38
DNA accessibility
14
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
42
October, 2019
22
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
98
bam
98
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
133
Homo sapiens
Biosample type
120
tissue
13
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
350
kidney
343
heart
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
101
hg19
83
GRCh38
Lab
133
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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