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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
35
DNase-seq
11
total RNA-seq
9
snATAC-seq
6
Hi-C
3
ATAC-seq
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
134
DNA binding
47
DNA accessibility
14
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
58
histone
58
histone modification
51
transcription factor
36
broad histone mark
23
control
22
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
43
June, 2019
42
October, 2019
27
December, 2018
22
August, 2017
18
January, 2019
15
November, 2018
8
January, 2021
8
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
January, 2018
2
May, 2022
Available data
158
bam
153
bigWig
141
bed narrowPeak
127
bigBed narrowPeak
60
fastq
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
202
Homo sapiens
Biosample type
120
tissue
61
cell line
21
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
8
T1D
Genome assembly (visualization)
156
hg19
137
GRCh38
Lab
194
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
202 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
Hi-C
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
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