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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
3
Transcription
Date released
33
June, 2019
8
July, 2019
4
August, 2017
3
March, 2020
2
May, 2022
1
January, 2018
Available data
37
bigWig
36
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
51
Homo sapiens
Biosample type
48
tissue
3
primary cell
Organ
325
pancreas
264
epithelium
242
kidney
187
heart
97
bone element
73
vasculature
70
blood vessel
57
connective tissue
51
artery
51
brain
51
musculature of body
50
liver
49
limb
37
eye
20
adipose tissue
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
42
hg19
36
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
total RNA-seq
BIOSAMPLE
ASSAY
51 results
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DNase-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
4
1
1
1
1
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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