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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
1
January, 2018
1
May, 2022
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
56
Homo sapiens
Biosample type
52
tissue
4
primary cell
Organ
722
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
259
heart
240
kidney
239
liver
134
vasculature
131
blood vessel
107
artery
71
bone element
68
brain
56
eye
56
limb
56
musculature of body
20
lung
18
ureter
15
embryo
12
skeleton
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
txt
BIOSAMPLE
ASSAY
56 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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