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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
3D chromatin structure
2
DNA methylation
Date released
33
June, 2019
10
July, 2019
5
March, 2020
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
53
Homo sapiens
Biosample type
49
tissue
4
primary cell
Organ
634
pancreas
523
connective tissue
411
adipose tissue
392
epithelium
302
kidney
259
heart
233
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
44
hg19
40
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
53 results
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DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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