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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
2
May, 2022
January, 2018
Available data
40
bam
40
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
52
tissue
4
primary cell
Organ
728
pancreas
530
connective tissue
417
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
56
musculature of body
20
lung
18
ureter
16
skeleton
14
embryo
8
blood
8
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
January, 2018
BIOSAMPLE
ASSAY
56 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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