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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
9
Transcription
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
35
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
bed bed3+
1
txt
Organism
57
Homo sapiens
Biosample type
44
tissue
13
primary cell
Organ
929
pancreas
781
liver
674
connective tissue
497
epithelium
489
adipose tissue
320
heart
272
kidney
251
brain
220
vasculature
216
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
57
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
Hi-C
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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