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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
59
DNA binding
9
Transcription
8
DNA methylation
6
3D chromatin structure
3
DNA accessibility
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
26
August, 2017
10
July, 2019
10
June, 2019
8
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
50
bigWig
47
bam
40
bed narrowPeak
26
bigBed narrowPeak
25
fastq
15
tagAlign
13
bed broadPeak
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
Organism
87
Homo sapiens
Biosample type
74
tissue
13
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
53
hg19
35
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
spleen
20
2
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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