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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
19
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
19
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
14
August, 2017
10
July, 2019
6
June, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
19
bigWig
16
bam
11
bed narrowPeak
9
tsv
7
tagAlign
6
bigBed narrowPeak
5
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
43
Homo sapiens
Biosample type
34
tissue
9
primary cell
Organ
860
pancreas
743
liver
631
connective tissue
469
adipose tissue
461
epithelium
286
heart
258
kidney
184
brain
180
vasculature
176
blood vessel
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
43
musculature of body
33
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
24
hg19
12
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
3
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
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