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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
9
Transcription
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
6
July, 2019
6
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
84
Homo sapiens
Biosample type
72
tissue
12
primary cell
Organ
884
pancreas
679
liver
648
connective tissue
486
epithelium
467
adipose tissue
341
kidney
330
heart
252
brain
209
vasculature
204
blood vessel
159
bone element
132
artery
101
limb
84
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
18
ureter
18
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
71
hg19
53
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
Hi-C
target.investigated_as!
control
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
13
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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