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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
31
bigWig
27
bed narrowPeak
20
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
57
Homo sapiens
Biosample type
45
tissue
12
primary cell
Organ
596
liver
535
pancreas
374
epithelium
251
heart
237
brain
213
kidney
201
connective tissue
164
vasculature
160
blood vessel
97
bone element
91
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
57
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
36
hg19
16
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
DNase-seq
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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