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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
total RNA-seq
257
ChIP-seq
153
ATAC-seq
75
single cell RNA-seq
52
WGBS
41
DNase-seq
15
Hi-C
12
snATAC-seq
10
MeRIP-seq
7
RRBS
4
small RNA-seq
2
Capture-C
2
FAIRE-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
153
DNA accessibility
75
Transcription
Date released
58
May, 2022
37
July, 2018
33
April, 2018
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
August, 2018
3
October, 2019
3
September, 2020
1
January, 2018
1
June, 2018
Available data
139
bam
125
fastq
116
bigWig
76
tsv
64
bed narrowPeak
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
Organism
228
Homo sapiens
Biosample type
145
primary cell
64
tissue
19
cell line
Organ
226
pancreas
173
epithelium
140
heart
139
kidney
52
blood vessel
52
vasculature
47
artery
29
connective tissue
28
eye
24
liver
12
bone element
12
skeleton
9
lung
8
limb
7
brain
6
adipose tissue
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
168
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
146
hg19
133
GRCh38
Lab
145
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
24
inconsistent ontology term
BIOSAMPLE
ASSAY
228 results
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ATAC-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
35
12
pancreatic beta cell
23
12
pancreatic acinar cell
9
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
tissue
islet of Langerhans
58
body of pancreas
4
skeletal muscle tissue
1
1
cell line
EndoC_BH1
19
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