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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
327
total RNA-seq
177
ChIP-seq
82
ATAC-seq
40
DNase-seq
12
Hi-C
12
snATAC-seq
10
MeRIP-seq
6
RRBS
5
WGBS
3
small RNA-seq
2
Capture-C
2
FAIRE-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
82
DNA accessibility
Date released
20
November, 2019
18
May, 2022
16
May, 2021
11
February, 2023
5
October, 2017
4
March, 2019
4
March, 2020
3
October, 2019
1
January, 2018
Available data
43
bam
42
bed narrowPeak
24
fastq
10
bigWig
2
bed broadPeak
2
tsv
Organism
82
Homo sapiens
Biosample type
primary cell
63
tissue
19
cell line
Organ
81
pancreas
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
31
epithelium
28
eye
23
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
71
AMP
11
T1D
Genome assembly (visualization)
50
hg19
27
GRCh38
Lab
48
AMP-T2D consortium
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
body of pancreas
4
skeletal muscle tissue
1
cell line
EndoC_BH1
19
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