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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
383
total RNA-seq
225
ChIP-seq
139
ATAC-seq
75
single cell RNA-seq
52
WGBS
41
DNase-seq
15
Hi-C
12
snATAC-seq
10
MeRIP-seq
7
RRBS
4
small RNA-seq
2
Capture-C
2
FAIRE-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
139
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
1
January, 2018
Available data
51
bam
50
bed narrowPeak
42
fastq
39
zippedFastqFolder
28
bigWig
8
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
139
Homo sapiens
Biosample type
63
tissue
57
primary cell
19
cell line
Organ
138
pancreas
89
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
79
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
58
hg19
45
GRCh38
Lab
56
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
month_released!
September, 2018
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
body of pancreas
4
skeletal muscle tissue
1
primary cell
pancreatic alpha cell
32
pancreatic beta cell
19
pancreatic acinar cell
6
cell line
EndoC_BH1
19
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