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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
99
DNA binding
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
27
December, 2018
22
August, 2017
18
January, 2019
15
November, 2018
10
June, 2019
7
May, 2019
Available data
81
bed narrowPeak
81
bigWig
77
bam
68
bigBed narrowPeak
60
fastq
15
tagAlign
13
bed broadPeak
Organism
99
Homo sapiens
Biosample type
60
cell line
29
tissue
10
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
99
AMP
Genome assembly (visualization)
81
hg19
67
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
cell line
GM12878
60
tissue
skeletal muscle tissue
22
muscle of leg
7
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
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