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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
67
total RNA-seq
47
ATAC-seq
42
DNase-seq
11
Hi-C
7
single cell RNA-seq
5
RRBS
3
WGBS
2
pCHi-C
2
small RNA-seq
1
FAIRE-seq
1
snATAC-seq
Assay category
138
DNA binding
Target of assay
103
histone
103
histone modification
65
broad histone mark
38
narrow histone mark
27
control
8
transcription factor
4
RNA binding protein
Date released
57
May, 2019
40
October, 2019
22
August, 2017
10
June, 2019
6
February, 2021
3
November, 2017
Available data
116
bam
103
bigWig
100
bed narrowPeak
83
bigBed narrowPeak
21
tagAlign
17
bed broadPeak
4
bigBed broadPeak
3
fastq
Organism
138
Homo sapiens
Biosample type
102
tissue
30
primary cell
6
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
138
AMP
Genome assembly (visualization)
103
hg19
86
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
138 results
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Clear Filters
ChIP-seq
tissue
tibial artery
23
skeletal muscle tissue
22
ascending aorta
16
thoracic aorta
16
aorta
13
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
skeletal muscle satellite cell
8
brain microvascular endothelial cell
3
skeletal muscle cell
2
cell line
smooth muscle cell of the coronary artery
6
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