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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
3
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
1
snATAC-seq
Assay category
35
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
20
histone
20
histone modification
15
control
12
broad histone mark
8
narrow histone mark
Date released
26
August, 2017
5
July, 2019
5
October, 2019
4
February, 2020
4
May, 2019
3
March, 2020
2
August, 2021
2
February, 2021
2
June, 2019
2
May, 2022
1
January, 2018
Available data
17
tagAlign
15
bigWig
14
bed narrowPeak
13
bam
13
bed broadPeak
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
56
Homo sapiens
Biosample type
51
tissue
3
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
GRCh38
166
hg19
Lab
56
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
tibial artery
5
1
gastrocnemius medialis
4
1
coronary artery
2
1
psoas muscle
2
1
+ See 3 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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