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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
4
3D chromatin structure
3
Transcription
2
DNA methylation
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
4
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
3
tsv
2
tagAlign
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
22
Homo sapiens
Biosample type
20
tissue
2
primary cell
Organ
284
pancreas
225
kidney
213
epithelium
165
liver
159
heart
122
brain
93
connective tissue
89
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
hg19
52
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
muscle of leg
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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