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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
6
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
6
control
6
histone
histone modification
4
broad histone mark
2
narrow histone mark
Date released
5
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
3
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
17
Homo sapiens
Biosample type
15
tissue
2
primary cell
Organ
279
pancreas
225
kidney
210
epithelium
165
heart
146
liver
89
bone element
68
blood vessel
68
vasculature
52
brain
52
connective tissue
48
artery
35
adipose tissue
25
eye
25
limb
20
lung
17
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
17
AMP
Genome assembly (visualization)
hg19
40
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
3
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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