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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
snATAC-seq
Assay category
35
DNA accessibility
27
DNA binding
6
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
15
August, 2017
6
July, 2019
6
May, 2019
4
March, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
74
Homo sapiens
Biosample type
62
tissue
12
primary cell
Organ
674
pancreas
630
liver
592
connective tissue
428
adipose tissue
327
epithelium
232
heart
228
brain
211
kidney
202
vasculature
196
blood vessel
128
artery
97
limb
74
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
16
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
74
AMP
Genome assembly (visualization)
73
hg19
53
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
74 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
muscle of leg
13
6
1
skeletal muscle tissue
13
1
2
1
1
1
muscle of arm
17
psoas muscle
2
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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