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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
37
DNase-seq
8
ATAC-seq
8
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
55
DNA binding
45
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
17
narrow histone mark
Date released
52
October, 2019
41
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
2
March, 2020
Available data
111
bam
105
bigWig
100
bed narrowPeak
92
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
10
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
111
Homo sapiens
Biosample type
100
tissue
11
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
111
AMP
Genome assembly (visualization)
131
hg19
111
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
small RNA-seq
WGBS
tissue
tibial nerve
24
2
1
4
tibial artery
18
2
1
muscle of leg
5
13
1
muscle of arm
17
psoas muscle
2
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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