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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
9
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
9
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
2
control
Date released
34
June, 2019
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
48
bam
47
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
33
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
61
Homo sapiens
Biosample type
55
tissue
6
primary cell
Organ
736
liver
677
pancreas
540
connective tissue
433
adipose tissue
404
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
75
bone element
69
blood
69
bodily fluid
61
eye
61
musculature of body
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
61
AMP
Genome assembly (visualization)
50
hg19
45
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
61 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
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