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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
32
DNase-seq
18
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
GRO-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
49
DNA binding
34
DNA accessibility
21
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
10
control
3
transcription factor
Date released
34
June, 2019
26
August, 2017
13
February, 2018
10
July, 2019
9
December, 2017
8
August, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
85
bigWig
78
bam
64
bed narrowPeak
45
bed broadPeak
39
bigBed narrowPeak
36
bed bed3+
32
bigBed broadPeak
25
fastq
21
tsv
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
118
Homo sapiens
Biosample type
81
tissue
23
in vitro differentiated cells
8
cell line
6
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
118
AMP
Genome assembly (visualization)
90
hg19
70
GRCh38
1
hg18
Lab
118
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
GRO-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 3 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
cell line
H1-hESC
8
primary cell
skeletal muscle cell
2
1
1
skeletal muscle satellite cell
1
1
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