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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
51
DNA binding
36
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
32
histone
32
histone modification
20
broad histone mark
13
control
12
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
34
June, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
76
bigWig
72
bam
66
bed narrowPeak
52
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
26
fastq
15
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
112
Homo sapiens
Biosample type
106
tissue
6
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
112
AMP
Genome assembly (visualization)
79
hg19
61
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
WGBS
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
spleen
20
1
2
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle cell
2
1
1
skeletal muscle satellite cell
1
1
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